[Bug 1353] New: Using FastQC program this error appeared

bugzilla-daemon at icedtea.classpath.org bugzilla-daemon at icedtea.classpath.org
Fri Mar 22 05:20:19 PDT 2013


            Bug ID: 1353
           Summary: Using FastQC program this error appeared
    Classification: Unclassified
           Product: VisualVM Harness
           Version: unspecified
          Hardware: x86
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P3
         Component: VisualVM
          Assignee: unassigned at icedtea.classpath.org
          Reporter: mokita_braga at hotmail.com

$ fastqc -t 500 sequence.fastq
Started analysis of sequence.fastq

It started and went until 100%, but in the end while generating a zip file this

[thread 140382687459072 also had an error]
[thread 140382688511744 also had an error]
# A fatal error has been detected by the Java Runtime Environment:
#  [thread 140382686406400 also had an error]
SIGSEGV (0xb) at pc=0x00007fcc14850fb2, pid=8459, tid=140382689564416
# JRE version: 6.0_24-b24
# Java VM: OpenJDK 64-Bit Server VM (20.0-b12 mixed mode linux-amd64 )
# Derivative: IcedTea6 1.11.5
# Distribution: CentOS release 6.3 (Final), package
# Problematic frame:
# V  [libjvm.so+0x311fb2]  ftell+0x311fb2
# An error report file with more information is saved as:
# /tmp/hs_err_pid8459.log
# If you would like to submit a bug report, please include
# instructions how to reproduce the bug and visit:
#   http://icedtea.classpath.org/bugzilla

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